Most of the checkboxes on the left side (might be all of them, I haven't checked them all) are making the bot crash when you tick them, this is just a heads up, I have no clue how to fix it, sorry.
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Well apparently you can't change anything on the left side in this update (Will most likely get fixed in the next update), but it's right here:
Like I said, that can't be changed in this update since it crashes the bot, so the only thing you can do is choose which Pokémon not to transfer.